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MATH-493
13 May
Lecture 11 slides (OPTIONAL)
Lecture 11 slides (OPTIONAL)
Cliquer le lien
AB12.pdf
pour afficher le fichier.
◄ Lab 10 (OPTIONAL)
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Announcements
CRAN: The Comprehensive R Archive Network
R Studio downloads page
Quick-R home page
R Markdown: The Definitive Guide
R Markdown lessons from R Studio
knitr with R Markdown - Karl Broman's website
Forum: Finding group members
Video Lecture 1a
Lecture 1a slides - Reproducible Research
Video Lecture 1b (from end of Prob-Stat I)
Lecture 1b slides - Hypothesis testing review
Power example
Lab 1 - EDA (exploratory data analysis)
Installing R and RStudio
Getting started with R/RStudio
TP 0
Q+A Week 1
Video Lecture 2a
Video Lecture 2b
Lecture 2 slides
Lab 2a
Lab 2a - reponses to questions in class
Linear Models in R
Linear Statistical Models (MASS ch. 6)
Lab 2b (optional but strongly suggested - tutorial on R Markdown)
Q+A Week 2
Report 1 - Group / Data assignments
Report 1 criteria
Reports - ADDITIONAL TIPS
Q+A Report 1
Video Lecture 3a
Video Lecture 3b
Lecture 3 slides
Lab 3
Lab 3 - reponses to questions in class
Q+A Week 3
Video Lecture 4a
Video Lecture 4b
Lecture 4 slides
Lab 4
Lab 4 data
Q+A Week 4
Video Lecture 5a
Video Lecture 5b
Video Lecture 5c
Lecture 5 slides
Titanic example of logistic regression in R
Evaluating logistic regression models
Poisson regression in R
Lab 5
Lab 5 - responses to questions in class
Q+A Week 6
Study assessment questions
Video Lecture 6a
Video Lecture 6b
Lecture 6 slides
R Data Camp survival analysis tutorial
Cox ph modeling in R
My.stepwise R package
Lab 6
Comments Lab 6
Q+A Week 7
R1
R2
A1
A2
Late prelim reports (any)
Video Lecture 7a
Video Lecture 7b
Lecture 7 slides
Discrete data analysis with R
Lab 7
Additional comments labs 6+7
More on mosaic plots
Q+A Week 8
Video Lecture 8a (same as Statistical Genetics Lecture 4a)
Video Lecture 8b (same as Statistical Genetics Lecture 4b)
Video Lecture 8c
Lecture 8 slides
Lab 8a - PCA (OPTIONAL)
Food data
Lab 8b - Multiple testing (OPTIONAL)
GWAS-extras + data files
PCs in GWAS - Nature Genetics paper
PCs in GWAS - slide presentation
Manhattan plot with -log10p on y-axis
GWASTools BioConductor R package (data cleaning/qc tools, maybe interesting)
Other tutorial for SNPRelate (possibly interesting, completely optional)
SNPassoc paper (optional but maybe useful)
SNPassoc R package (contains functions for eigenstrat, Cochran-Armitage (trend) test, etc.)
Lecture 9 slides (OPTIONAL)
Quick introduction to pwr package in R (OPTIONAL)
Lab 9 (OPTIONAL) - power tutorial
Lecture 10 slides (OPTIONAL)
Lab 10 (OPTIONAL)
Lab 11 (OPTIONAL)
Logistic prelim report
GLM prelim report
Survival prelim report
Discrete prelim report
GWAS prelim report
LATE prelim reports - ANY
Video Lecture 12a (OPTIONAL)
Video lecture 12b (OPTIONAL)
Lecture 12 slides (OPTIONAL)
Lab 12 (old lab 6) - OPTIONAL
Hierarchichal clustering in R
Heatmaps in R
Heatmaps in R - short tutorial
R graph gallery - heatmaps
article L1 - due 15 July 23.59
article L2 - due 15 July 23.59
Lab 11 (OPTIONAL) ►
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